Protein Info for ABCV34_RS07660 in Castellaniella sp019104865 MT123

Annotation: FAD-dependent oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 763 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF07992: Pyr_redox_2" amino acids 8 to 306 (299 residues), 219 bits, see alignment E=2.9e-68 PF13738: Pyr_redox_3" amino acids 72 to 280 (209 residues), 42 bits, see alignment E=2.1e-14 PF00070: Pyr_redox" amino acids 149 to 228 (80 residues), 58.4 bits, see alignment E=2.5e-19 PF14759: Reductase_C" amino acids 326 to 411 (86 residues), 28.5 bits, see alignment E=5.5e-10 PF01734: Patatin" amino acids 417 to 615 (199 residues), 109 bits, see alignment E=1.1e-34 PF12536: DUF3734" amino acids 652 to 749 (98 residues), 55.7 bits, see alignment E=1.7e-18

Best Hits

KEGG orthology group: K07001, (no description) (inferred from 66% identity to bav:BAV0262)

Predicted SEED Role

"Ferredoxin reductase" in subsystem Anaerobic respiratory reductases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (763 amino acids)

>ABCV34_RS07660 FAD-dependent oxidoreductase (Castellaniella sp019104865 MT123)
MATQHIDFLLIGGGLASAQAAQTLRQEGTTGSILILSAEPNLPYHRPFLSKARLLGTADE
ARTLVHPESFYRDQRIDVALDTRAVAVDTAEQWVETSAGSRIHYGKLLIATGACARQLDV
PGASLGGIHVLRTQADADVIRQAAAKARRVVVVGGSFLGMEVAVTLRQLGLDVAVIEIGD
RILRRLESAMLSDFLQRHVEQDKGIAIVPNASVVAFHGRGKVKEVEISSGAKISCDLVVV
CIGIAPATQFLNGSGVKLEDGFVEVDDRLQASAPNVFAAGDVASFLDPVFSRRRHVEHWD
NAIKQGQLAARNMLERRRRYDTVSYFFCEVGDFGFNFLGDPTGTHERIAQGSLQERAFSL
LYLSQDILHAVFTLGRTADEVRAAESLIRYRTSLRKDKHRLKDPTFALNTLPMQNVLILQ
GGGALGAFECGVIKALEERGIFPDIVAGISIGAFNGAIVASHPGHATEALESFWADIEVA
TLPGPNEPARRAATAARIMSFGVEKFFRPRWIPSFDAPWEPPWSWTGLYDTSPMRRLLEQ
YVDFPALKSSPVRLLVSAVNVLSAELETFDSYVDDFTPEHILASGSLPPGFSWTWVDGKP
YWDGGVVSNAPLDLVIDRCGPDGKRVFMVDLFSNQKALPGNITEVMARRDEIVYAQRVRS
DLHLREQADAYRGLIAHLMQEIEPALQDKIRRLPRYIQLMGNGIGTRITRFTRKPPPEEL
PSRDYDFSDVAIRGNQAQGYALAQAVLASCDPAGGIGPASPAG