Protein Info for ABCV34_RS07440 in Castellaniella sp019104865 MT123

Annotation: molecular chaperone DnaJ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 376 PF00226: DnaJ" amino acids 5 to 67 (63 residues), 98.1 bits, see alignment E=3.9e-32 TIGR02349: chaperone protein DnaJ" amino acids 5 to 351 (347 residues), 448.8 bits, see alignment E=8.6e-139 PF01556: DnaJ_C" amino acids 122 to 335 (214 residues), 172.4 bits, see alignment E=1e-54 PF00684: DnaJ_CXXCXGXG" amino acids 149 to 208 (60 residues), 61.1 bits, see alignment E=1.5e-20

Best Hits

Swiss-Prot: 83% identical to DNAJ_BORPD: Chaperone protein DnaJ (dnaJ) from Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448)

KEGG orthology group: K03686, molecular chaperone DnaJ (inferred from 86% identity to put:PT7_1930)

MetaCyc: 57% identical to chaperone protein DnaJ (Escherichia coli K-12 substr. MG1655)
1.8.4.-

Predicted SEED Role

"Chaperone protein DnaJ" in subsystem Heat shock dnaK gene cluster extended or Protein chaperones

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (376 amino acids)

>ABCV34_RS07440 molecular chaperone DnaJ (Castellaniella sp019104865 MT123)
MAKRDFYEILGVAKNASDDDIRKAYRKLAMKYHPDRNPDSKEAEDKFKEAKEAYEMLSDA
EKRAAYDRFGHAGVDPNAAAGAGMGGAGGFADAFGDIFGEIFGGAGGRRGGGGPQVYRGA
DLKYNLEISLEQAASGFDTEIRIPSWETCDTCHGSGAKPGTTPHTCHTCGGSGAVRMQQG
FFSVQQTCPTCHGSGKEIPNPCAECDGVGRIRKNKTLQVKIPAGIDDGMRIRSSGNGEPG
VNGGPPGDLFVEIRIKPHGIFQRDGEDLHCELTIPFTKAALGGTLEVPTLSGRGEITIPE
GTQTGKTFRLRGKGIKGIRSSYPGDLYCHVAVETPVRLNDEQKALLRQFETSLTSGGDRH
SPKSESWTDKVKSFFS