Protein Info for ABCV34_RS07190 in Castellaniella sp019104865 MT123

Annotation: SLC13 family permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 614 transmembrane" amino acids 158 to 174 (17 residues), see Phobius details amino acids 183 to 201 (19 residues), see Phobius details amino acids 206 to 227 (22 residues), see Phobius details amino acids 235 to 258 (24 residues), see Phobius details amino acids 274 to 297 (24 residues), see Phobius details amino acids 318 to 338 (21 residues), see Phobius details amino acids 360 to 384 (25 residues), see Phobius details amino acids 412 to 431 (20 residues), see Phobius details amino acids 437 to 454 (18 residues), see Phobius details amino acids 466 to 484 (19 residues), see Phobius details amino acids 503 to 538 (36 residues), see Phobius details amino acids 544 to 563 (20 residues), see Phobius details amino acids 587 to 608 (22 residues), see Phobius details PF00027: cNMP_binding" amino acids 36 to 117 (82 residues), 40.9 bits, see alignment E=2.5e-14 PF00939: Na_sulph_symp" amino acids 162 to 598 (437 residues), 64.6 bits, see alignment E=1.4e-21 PF03600: CitMHS" amino acids 197 to 551 (355 residues), 44.6 bits, see alignment E=1.6e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (614 amino acids)

>ABCV34_RS07190 SLC13 family permease (Castellaniella sp019104865 MT123)
MQADRLAITIQEHPLLAQFSPLDRARLLAATESCDFAAGDEIYRAGDQARHAYWILEGQV
ELASTRASAPLGAGDAFGAEAFADSATHAHHLTNARAVTPVAAVRVARAALLELASHNPP
LKSGALLGLAARLGELSPPAHPPVPVAAARPLPWRQRIGWGAALVVPPLVWWLADRAGLP
PQAAVYLGLFTLTALMWLFALVDEFIPPIMAVVAMLFIDLVPADVALHGFYSRTFLLLLG
VYALAAVMVSSGLAYRFMLWVLVRLPDSAFWHRAALTLFGFLLSIVMPSANARLALLLPL
YREMDDSLGARAQSREASALMIAVFTGATLFSPLLLTAKSSNLAAFVSLPTQVRAEYQGL
GWLVSAAVVAVGLLGVHALAMRFLFRAEVSRPLPVARIQAQMTLLGPLRAPEWVAALAFL
VFLLGAIVPQWHQSQTAWLAGFVLIGLLILGLFNKGAFKTQIDWPLIFFLLCLDGLTEAI
HYLGLDVLMIQAIGHHLDWVGGSLGWFILLALVVTVALRLVLPLTAGMILAVTVLMPIGL
EQGIHPWLVVFLASLFSDIWFMPHQNSALQQALAAGLRSRCDEMLFFRYAWWLNPLRIVL
AYASIPYWKWLGLY