Protein Info for ABCV34_RS06855 in Castellaniella sp019104865 MT123

Annotation: cytochrome-c oxidase, cbb3-type subunit III

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 transmembrane" amino acids 9 to 29 (21 residues), see Phobius details amino acids 63 to 82 (20 residues), see Phobius details TIGR00782: cytochrome c oxidase, cbb3-type, subunit III" amino acids 39 to 298 (260 residues), 275.5 bits, see alignment E=2.5e-86 PF14715: FixP_N" amino acids 42 to 89 (48 residues), 76.5 bits, see alignment 1.5e-25 PF13442: Cytochrome_CBB3" amino acids 134 to 206 (73 residues), 57.7 bits, see alignment E=1.8e-19 amino acids 219 to 294 (76 residues), 49.1 bits, see alignment E=9.1e-17 PF00034: Cytochrom_C" amino acids 136 to 210 (75 residues), 41.1 bits, see alignment E=5.8e-14 amino acids 220 to 295 (76 residues), 32.6 bits, see alignment E=2.6e-11

Best Hits

Swiss-Prot: 54% identical to CCOP_RUBGE: Cbb3-type cytochrome c oxidase subunit CcoP (ccoP) from Rubrivivax gelatinosus

KEGG orthology group: K00406, cb-type cytochrome c oxidase subunit III [EC: 1.9.3.1] (inferred from 71% identity to put:PT7_1442)

Predicted SEED Role

"Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)" in subsystem Terminal cytochrome C oxidases (EC 1.9.3.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.9.3.1

Use Curated BLAST to search for 1.9.3.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (300 amino acids)

>ABCV34_RS06855 cytochrome-c oxidase, cbb3-type subunit III (Castellaniella sp019104865 MT123)
MSDFISSFWSYYIAIIALGGIVWCVYLLFSQRAWLKRDVKVVESTGHVWDGDLTELNNPV
PRWWTVMYLLLCAFALGYLVLYPGLGSYKGTLGFTAGNQVLQEQDALNARIQPIYERFRD
MPIPEIAKDAQARDIGQRLFLNNCAQCHGSDAKGGRGFPNLTDNDWLWGGSPDQILQTIT
KGRHGMMPAWGAVIKPEEASAIAQYVRSLSGLAHDPLRVNAGKRGFETYCVACHGADAKG
NPLVGAPNLTDEIWLYGSSEATILETILNGRTNQMPAQEKNLTPEQIRLLAAWVWGQSNR