Protein Info for ABCV34_RS06420 in Castellaniella sp019104865 MT123
Annotation: peptidase U32 family protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 61% identical to YHBU_ECOLI: Uncharacterized protease YhbU (yhbU) from Escherichia coli (strain K12)
KEGG orthology group: K08303, putative protease [EC: 3.4.-.-] (inferred from 83% identity to bpd:BURPS668_2692)Predicted SEED Role
"FIG139552: Putative protease" in subsystem CBSS-214092.1.peg.3450
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 3.4.-.-
Use Curated BLAST to search for 3.4.-.-
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (350 amino acids)
>ABCV34_RS06420 peptidase U32 family protein (Castellaniella sp019104865 MT123) MSSTPSIRPGVVPHHGLSSFELVCPAGSLPALKSAVDEGADCVYLGFRDATNARNFAGLN FDATAIAQGIRYAHDRGRKVFLALNTYPQPDAWRLWQESVDRAADSGVDAVIMADPGLMA YAHARYPDLRLHLSVQGSATNYEAIHFYHERFGIARVVLPRVLSVAQVQQVCENAPVEIE VFGFGSLCVMVEGRCALSSYATGESPNTHGVCSPAKHVRWQQTDAGLESRLNGVLIDRYD QGENAGYPTLCKGRFDVAGENYYALEEPTSLNTLELLPKLMAMGVRAIKIEGRQRSPAYV AQVTRVWRQAIDQARSNSARYSVHPSWMAELNKVAEGQQHTLGAYHRPWK