Protein Info for ABCV34_RS06365 in Castellaniella sp019104865 MT123

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 374 PF00005: ABC_tran" amino acids 37 to 178 (142 residues), 125.8 bits, see alignment E=2e-40 TIGR01187: polyamine ABC transporter, ATP-binding protein" amino acids 51 to 346 (296 residues), 360.9 bits, see alignment E=2.8e-112 PF08402: TOBE_2" amino acids 295 to 372 (78 residues), 34.4 bits, see alignment E=1.9e-12

Best Hits

KEGG orthology group: K02052, putative spermidine/putrescine transport system ATP-binding protein (inferred from 57% identity to pap:PSPA7_0747)

Predicted SEED Role

"Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1)" in subsystem Polyamine Metabolism (TC 3.A.1.11.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (374 amino acids)

>ABCV34_RS06365 ABC transporter ATP-binding protein (Castellaniella sp019104865 MT123)
MGHPGEMRSTAPSRSAEALVRFEEVKKSYDGVNFVVSGLNLSVRRGEFLTMLGPSGSGKT
TTLMMLGGFERPTLGRILLDGKPVERLPPEKRNIGFVFQNYALFPHMTVAENVAFPLRYR
GIKGADAAATVRQALGRVGLGNFGDRKPAQLSGGQQQRVALARALVFEPSLVLMDEPLGA
LDKQLREHMQIEIKRLQVSLGITMVYVTHDQSEALTMSDRIAVFHDGRIQQLAEPEMLYK
QPSNRFVASFIGENNTLSCSLVAHEGDLAVVRMPDGTILKGMGHGLSGATDDVSLSVRPE
SLTLASGEPCGKGNRIIGEAHEVFFLGDHMRLSIKAFGSQMLTARIPAREARHFVPGEPV
ALDCGIADCQLLEA