Protein Info for ABCV34_RS06265 in Castellaniella sp019104865 MT123

Annotation: ABC transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 283 transmembrane" amino acids 42 to 64 (23 residues), see Phobius details amino acids 71 to 88 (18 residues), see Phobius details amino acids 95 to 119 (25 residues), see Phobius details amino acids 139 to 165 (27 residues), see Phobius details amino acids 213 to 237 (25 residues), see Phobius details amino acids 249 to 269 (21 residues), see Phobius details PF00528: BPD_transp_1" amino acids 123 to 268 (146 residues), 65.8 bits, see alignment E=2.2e-22

Best Hits

Swiss-Prot: 32% identical to OPUAB_BACSU: Glycine betaine transport system permease protein OpuAB (opuAB) from Bacillus subtilis (strain 168)

KEGG orthology group: K02001, glycine betaine/proline transport system permease protein (inferred from 62% identity to ara:Arad_8148)

Predicted SEED Role

"L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1)" in subsystem Choline and Betaine Uptake and Betaine Biosynthesis (TC 3.A.1.12.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (283 amino acids)

>ABCV34_RS06265 ABC transporter permease subunit (Castellaniella sp019104865 MT123)
MNHTDLISAFDGWMEDALARLTDSSSQIFTAIQAGLEGLNAAILWVLNLAPFYIVAGVVG
LLGWRLVSRRFGVLSAAALVICQMMNLWPETTATLALVIAATLLALLLAIPSGILSVYIR
GMSHLAEPMLDLLQTLPPYIYLLPGIALLGYGPATALVATLVVAFPPAFRLAALGMRMAP
VEYLELGMATGMTRWQMFTKIRLPFALPSIMAGINQSLMMAFGMVVIAGIVGSGGLGQTI
YDAIRKLDIAKSIDAALAIVILTMILDRLSQSAGASSPKGRKA