Protein Info for ABCV34_RS06110 in Castellaniella sp019104865 MT123

Annotation: urate hydroxylase PuuD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 405 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 87 to 105 (19 residues), see Phobius details amino acids 124 to 144 (21 residues), see Phobius details amino acids 158 to 178 (21 residues), see Phobius details amino acids 184 to 205 (22 residues), see Phobius details amino acids 237 to 254 (18 residues), see Phobius details amino acids 260 to 279 (20 residues), see Phobius details amino acids 291 to 309 (19 residues), see Phobius details PF06181: Urate_ox_N" amino acids 5 to 305 (301 residues), 405 bits, see alignment E=1.1e-125

Best Hits

KEGG orthology group: None (inferred from 68% identity to put:PT7_3006)

Predicted SEED Role

"conserved hypothetical membrane protein, paralogue of Y20848"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (405 amino acids)

>ABCV34_RS06110 urate hydroxylase PuuD (Castellaniella sp019104865 MT123)
MEGFFLEYGNLLLRWLHVIAAIAWIGESIYFVMLDLSLHAPKGELSKKLGVHGEMWAVHG
GGFYHNQKYLTNPAELPDDLHWSFWKAYTTWLSGFGLFMLLYLLKADIYLVNPASPWEWA
RQMGGVEAGTLAVLFLVVGYNVYSRLCRIISPTVNHDGWLSAAVGVMMIITAWLTSQIFP
GRAAFLITGALMATCMSANVFFWIIPGQRRMVNALKAGKKPNPLDGAWGKQRSVHNTYFT
LPVIFLMLSNHYSFTYSNPHAWLIMVLFIFAGAVIRQYFVLRHTGKNDLRYPAAGIVMLA
LIGWIAAPAPGASQAAGQASGASSAVTVGQVHGIVASRCVECHSAKPTQAGFAAAPAGIM
LDTKAEIIQHAAKIKEVVGNKYMPLANLTQMTDAERTVIAAWNGK