Protein Info for ABCV34_RS06040 in Castellaniella sp019104865 MT123

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 728 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF07715: Plug" amino acids 45 to 153 (109 residues), 86.2 bits, see alignment E=3.3e-28 PF00593: TonB_dep_Rec" amino acids 190 to 694 (505 residues), 155.6 bits, see alignment E=6.2e-49 PF14905: OMP_b-brl_3" amino acids 329 to 714 (386 residues), 49.4 bits, see alignment E=5.8e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (728 amino acids)

>ABCV34_RS06040 TonB-dependent receptor (Castellaniella sp019104865 MT123)
MTRLALATLVALIFPAQMAFADSAANAPAELAPIVVSASRDAATLEEIPQSTTIITRQQI
DESPAQSLDQLLRNVAGFNLSSVPATSKDPTGQSLGMRGLGNVSVLVLLDGIPIMDPFYG
TVQWYKVPLANIDHVEVVRGGSVVWGNMAVGGVVNIISRQLTDNQTAFSTHYGSFGTKDV
AFSQNIKVNDGLGLNLSVNRTDVRGYPLTPAAYRWRFPGRDSVWTRETNVQLSARFNPAS
DLQGYVRLGYHINDEKTGYEYGRAKQTTPDFAASLTKTLDKKSSVTASAWGQRVAFDKYN
GASCYWKPTGKCLSMPPSMQELPTAQANDRVDQYYSQYGDQSYNETGFSTIYSREIGNIW
QDIQLGVDYRRLGASDSEWIYNAPTVFGTPTGTLASTVEGNGTQTYSGVFVQTRIAPVDS
LLITLAARGDRFSSDISSTQGDNPELTGGTTKTRLDPSVSMRYFASDDLSLRASINRTFR
GPGLNNTLRSYGSPSSTPSIANPSLVPQDMLAREIGLDYKHGDLQLSATYFYYSIHNAIL
STSGSIADAPSEYQRALCAHFLAGSSNTNCSFYSNAGDQRSQGMELIGSYQVSPQLRING
SLTYTDAVLTSTTTNTPVDVQIAGIPKWTGNFGVSWSLTEKLQVAAQGRYIGRMNYYSSS
TLGTYSQGSNTVFDVNLRYHLTPAVDLTLAVNNVFDRTYTDSTWTYNQPYTQTLAPPRMA
YVGIQASF