Protein Info for ABCV34_RS05925 in Castellaniella sp019104865 MT123
Annotation: patatin-like phospholipase family protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K07001, (no description) (inferred from 64% identity to put:PT7_0528)Predicted SEED Role
"Ferredoxin reductase" in subsystem Anaerobic respiratory reductases
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (394 amino acids)
>ABCV34_RS05925 patatin-like phospholipase family protein (Castellaniella sp019104865 MT123) MPKTESRIQAALQAYDVRALVLQGGGALGAYQAGVFEGLNEAGINLTDLAGISIGALNVA IIAGNPLEKRVERLHEFWDTICQPYAGPGSNALMEQSLFQVNDLARQFLGTVHASSAVML GQKGFFHPRFPPAVLSPTLDPTCVGHYDTRPLKDTLEALCDFDRINDSGLHVSVGAVNVR TGNFVYFDNRKIRLRAEHFMASGALPPAFPAIEIDGEYYWDGGLVSNTPLSKVLQQCPER DTLVFQVDLWSACGPAPRSMSEVGDRVQDIRYSSRTRFVTDEMRAHRKMQRLLRQVLDQV PAELRESDPACRQAEGLACSARSNVIHLIYRDKPYEQHFRDFQFGPATMREHWATGLQDI RKTLAHPHYLSMPDNAAGFVTHDVHRDEAEESMQ