Protein Info for ABCV34_RS05645 in Castellaniella sp019104865 MT123

Annotation: flagellar basal-body MS-ring/collar protein FliF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 552 transmembrane" amino acids 14 to 36 (23 residues), see Phobius details amino acids 456 to 475 (20 residues), see Phobius details TIGR00206: flagellar M-ring protein FliF" amino acids 8 to 545 (538 residues), 417.7 bits, see alignment E=4.9e-129 PF01514: YscJ_FliF" amino acids 37 to 211 (175 residues), 229.4 bits, see alignment E=2.9e-72 PF08345: YscJ_FliF_C" amino acids 242 to 438 (197 residues), 143.5 bits, see alignment E=6.7e-46

Best Hits

KEGG orthology group: K02409, flagellar M-ring protein FliF (inferred from 57% identity to bpt:Bpet2147)

Predicted SEED Role

"Flagellar M-ring protein FliF" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (552 amino acids)

>ABCV34_RS05645 flagellar basal-body MS-ring/collar protein FliF (Castellaniella sp019104865 MT123)
MTKNPALARLTALPRPVLLGIGAAVVALLVVASLWMREPDYKTLFSNVESRDGGAIVGIL
NQRNIPYKFADNGATILVPADQVYALRLQLAEQGLPRGGSVGFELLDKPQFGASQFTEQV
TYQRALEGELARSVEALQPVKSARVHLAIPRESLFVRDREVPTASVLVTLFPSRSLSEAQ
VAAITWLVSSSVPKLNAENVSIVDQDGHLLSKPGGEAGLDTSRRNFINDIEQRTSQRILT
LLNPIVGPGNVRAQVSASVDFSQREQTSEVYRPNETPGTAAIRSKQTSDSMQNGVLPPAG
VPGALTNQPPANATAPIQTAQANQPAQGPGAQAANAPGGAPGATTQAVGTNSTQPTHGSA
RNDSTVNYEVDRTISHVKHELGTLQRLSVAVVVNYREKDGDPAPLDPAEMDNINALVKQA
MGYSVDRGDTLSVVNNAFTNQEPAVKPWEDPAYRSLALQVLKVVLVLAVLFFLWRSVIRP
IVQGFANAQVERVKNEAHLETMREQRRQDEVHESEMNRYEENLDTARQLAQRDPRAVAMV
LRAWMDPKNAKP