Protein Info for ABCV34_RS05310 in Castellaniella sp019104865 MT123

Annotation: ATP-dependent Clp protease adapter ClpS

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 107 PF02617: ClpS" amino acids 22 to 99 (78 residues), 119.1 bits, see alignment E=2.9e-39

Best Hits

Swiss-Prot: 65% identical to CLPS_BORPD: ATP-dependent Clp protease adapter protein ClpS (clpS) from Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448)

KEGG orthology group: K06891, ATP-dependent Clp protease adaptor protein ClpS (inferred from 69% identity to put:PT7_0701)

Predicted SEED Role

"ATP-dependent Clp protease adaptor protein ClpS" in subsystem Proteolysis in bacteria, ATP-dependent

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (107 amino acids)

>ABCV34_RS05310 ATP-dependent Clp protease adapter ClpS (Castellaniella sp019104865 MT123)
MPIVTQNQHELAHATAPTRLAPPPMYQVVLLNDDYTPMDFVVRVLRQVFHKGGDEAERIM
LQVHHEGRGVCGIYTRDVAATRVDAVLRMAHADQHPLQCLMEPVPLV