Protein Info for ABCV34_RS04925 in Castellaniella sp019104865 MT123

Annotation: iron ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 589 transmembrane" amino acids 14 to 37 (24 residues), see Phobius details amino acids 68 to 92 (25 residues), see Phobius details amino acids 104 to 125 (22 residues), see Phobius details amino acids 144 to 167 (24 residues), see Phobius details amino acids 206 to 227 (22 residues), see Phobius details amino acids 251 to 272 (22 residues), see Phobius details amino acids 303 to 329 (27 residues), see Phobius details amino acids 362 to 386 (25 residues), see Phobius details amino acids 406 to 427 (22 residues), see Phobius details amino acids 459 to 479 (21 residues), see Phobius details amino acids 509 to 528 (20 residues), see Phobius details amino acids 549 to 555 (7 residues), see Phobius details amino acids 558 to 583 (26 residues), see Phobius details PF00528: BPD_transp_1" amino acids 80 to 276 (197 residues), 48 bits, see alignment E=6.5e-17 amino acids 381 to 579 (199 residues), 35.7 bits, see alignment E=3.8e-13

Best Hits

KEGG orthology group: K02011, iron(III) transport system permease protein (inferred from 78% identity to axy:AXYL_00615)

Predicted SEED Role

"Ferric iron ABC transporter, permease protein" in subsystem Campylobacter Iron Metabolism or Iron acquisition in Vibrio or Transport of Iron

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (589 amino acids)

>ABCV34_RS04925 iron ABC transporter permease (Castellaniella sp019104865 MT123)
MSFLRLRQQSLPRGLVVTLTALAIYLPLSFIIVQSFLSEPFFLPDKHIGLDAFRFIFADP
DFYEALINGFLLAFGLVAIAVPLGGILAFLVSRTDLPGRRWIQPLILVPVFVSPMVLGFG
YVVAAGPVGFFSTWTQNLLGFVPWNIYSLPAIIVIAGLTHVPYAYLYISSALHSLGSDVE
EAARSTGASPLQVMTAVSLPMVRPALSYAAVLLFFLGLEVFGLMLVLGDPEGHLVLSTYL
YKLTNKLGVPSYHLMAAVAMVLIAFTIPLVTLQRHLLSSASRYATVKGKVTRPRVLPLGK
WRLTAGVIVGLWLFVAIIVPLTGVVLRAFVTNWGVGISLRDVLSVHAFQTIWEQPTLMRA
VWNSILIGVIGGALAVGCYTAIALAMHRKPDHATRFLDYSVLIPRAVPGLLAGLAFLWIF
LFIPMWLKDSLADGWLSVLPGAAWLQTHAVEPLRSLRSTIFSVWLAYSVVWMAYGLRLIS
STLLQVSPELEEAARSTGARPSQVTRHVTVPLARYGLIGSWLLMFLIFEREYSTGVYLLT
PGTETIGSMLVSLWATGAIDIVAALSFINILLVVIGMGVALRFGVKLHD