Protein Info for ABCV34_RS04065 in Castellaniella sp019104865 MT123

Annotation: OmpH family outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 183 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details PF03938: OmpH" amino acids 44 to 181 (138 residues), 115.2 bits, see alignment E=1.5e-37

Best Hits

KEGG orthology group: K06142, outer membrane protein (inferred from 76% identity to put:PT7_1035)

Predicted SEED Role

"Outer membrane protein H precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (183 amino acids)

>ABCV34_RS04065 OmpH family outer membrane protein (Castellaniella sp019104865 MT123)
MSLSGLNVSTLAQHAVRGHRALAVAAAIGLGALFVVPSYAQGTKIGFVSTERILRDSKPA
KAAQAKIEAEFKKRDQDLQKQADSLRSQAQKLDKDAPVLSEADRVKRQRQLQDIDSDLQR
KRREFQEDFNRRRNEEFSAIVEKADTAIKKIAEQQNYDLIIQDAVTVSPRVDITDQVIKA
LGG