Protein Info for ABCV34_RS03955 in Castellaniella sp019104865 MT123

Annotation: ankyrin repeat domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 303 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details PF12796: Ank_2" amino acids 95 to 163 (69 residues), 46.7 bits, see alignment E=9.9e-16 PF13637: Ank_4" amino acids 107 to 155 (49 residues), 38.6 bits, see alignment 2.6e-13 amino acids 169 to 214 (46 residues), 24.1 bits, see alignment 9.1e-09 PF13606: Ank_3" amino acids 135 to 163 (29 residues), 22.3 bits, see alignment (E = 3e-08) amino acids 169 to 194 (26 residues), 19.8 bits, see alignment (E = 2e-07) PF00023: Ank" amino acids 135 to 164 (30 residues), 29 bits, see alignment (E = 2.3e-10) amino acids 167 to 194 (28 residues), 25.9 bits, see alignment (E = 2.2e-09)

Best Hits

KEGG orthology group: K06867, (no description) (inferred from 47% identity to axy:AXYL_02840)

Predicted SEED Role

"FOG: Ankyrin repeat"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (303 amino acids)

>ABCV34_RS03955 ankyrin repeat domain-containing protein (Castellaniella sp019104865 MT123)
MFSHQVRQPACRHPQLLILLALLVLTFWGASVRAQQQPTADWWSAIRRDDVSAVQSMLLR
GVDPTAFNRLGNPALTQAARDQSWRVFDVLRIAPGVQIDEPNAHDETALMYLCIQGQTER
AATLIQAGAQVNRLGWTPLHYAASKGQVETASALIEWGAIVNAPGPDGTTPLMMAALSGK
EPMVRLLLSQGADATMFNAAHETAADWARKRNNTALAAQLDALAAKVARARSNPAQHPGA
SAGQGAVPVPVTPSGMAPPAAPAAPGGQATSTAGTAAQGSPQEDQSSFSRYFDLGRFDEP
SGH