Protein Info for ABCV34_RS03450 in Castellaniella sp019104865 MT123

Annotation: ABC transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 238 transmembrane" amino acids 20 to 45 (26 residues), see Phobius details amino acids 57 to 79 (23 residues), see Phobius details amino acids 99 to 119 (21 residues), see Phobius details amino acids 176 to 196 (21 residues), see Phobius details amino acids 202 to 225 (24 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 16 to 124 (109 residues), 44 bits, see alignment E=1.3e-15 PF00528: BPD_transp_1" amino acids 39 to 228 (190 residues), 73.2 bits, see alignment E=1.2e-24

Best Hits

KEGG orthology group: K10020, octopine/nopaline transport system permease protein (inferred from 68% identity to put:PT7_2597)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (238 amino acids)

>ABCV34_RS03450 ABC transporter permease subunit (Castellaniella sp019104865 MT123)
MISSLHDILSAGWGTLLLRGAGMTVFISLCGICLGMAIGIAGAALKAGGGWLARGAIGLY
TLIVRSVPELLIIYLLFFGTVQPAADLADWLNWDDLMSTVFPVLVGILAIGLISGSYSVE
VFRGAFKAIDPGQIEAARAIGMDRRQCLWRITLPQLLWYALPGANNVWQNALKDTALISL
VGLVELMRAAVLGAAATRAPLTLYLLAGILYFLIGVCSQGMFVWAERHFGRGMQGAAR