Protein Info for ABCV34_RS02980 in Castellaniella sp019104865 MT123

Annotation: NAD(P)H-hydrate dehydratase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 504 transmembrane" amino acids 27 to 46 (20 residues), see Phobius details amino acids 250 to 271 (22 residues), see Phobius details TIGR00197: YjeF family N-terminal domain" amino acids 14 to 212 (199 residues), 136.7 bits, see alignment E=8e-44 PF03853: YjeF_N" amino acids 36 to 191 (156 residues), 139.4 bits, see alignment E=1.2e-44 TIGR00196: YjeF family C-terminal domain" amino acids 238 to 471 (234 residues), 187.6 bits, see alignment E=3e-59 PF01256: Carb_kinase" amino acids 250 to 471 (222 residues), 180.7 bits, see alignment E=3.4e-57

Best Hits

KEGG orthology group: None (inferred from 59% identity to azl:AZL_019200)

Predicted SEED Role

"NAD(P)HX epimerase / NAD(P)HX dehydratase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (504 amino acids)

>ABCV34_RS02980 NAD(P)H-hydrate dehydratase (Castellaniella sp019104865 MT123)
MNPLSEAPCDAHVLLDPAQMARADRAAIASGVTGVRLMAAAGAAVARAIRERWSPRPTVI
LCGPGNNGGDGFIVAHLLRAAGWSVRVALWGNRADLRCDAARAAQEWGGPIETADAKSPQ
GAALIIDGLLGAGLSRAPAGALQALIQAINATGVPVCAIDVPTGLDGATGQSPGAAIQAD
LTVTFFRRKPGHLLLPGRLLCGELRCADIGIPASVLGPIASQTWINDPDLWQSLFPWPRT
GDHKYRRGHVLVVGGGVMLGASRLACLAAARIGAGLVTLAVPPSAWAIQAGALTSVMVES
LPNDGGLADALTDARRNVLLIGPGLGRSPVAQRQVLDLLASGRPCVLDADALSAFGDRPD
TLLDRLHAQCVLTPHEGEFARLFSLDGDKLRRARAAAQRSGAVIVLKGADTVIAAPDGRC
VINDNAPPTLATAGAGDVLAGCIAGLLAGGMPVFEAACAAVWLHGLAADRLGWGLLAEDL
PGALPGALESLARLDEHRMDSTHG