Protein Info for ABCV34_RS02895 in Castellaniella sp019104865 MT123

Annotation: TRAP transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 351 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF03480: DctP" amino acids 41 to 318 (278 residues), 124.2 bits, see alignment E=3.4e-40

Best Hits

KEGG orthology group: None (inferred from 58% identity to lch:Lcho_3675)

Predicted SEED Role

"TRAP transporter solute receptor, unknown substrate 3"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (351 amino acids)

>ABCV34_RS02895 TRAP transporter substrate-binding protein (Castellaniella sp019104865 MT123)
MKRHPLKPTVRLLTGMAASLMLVAAAHAEQIVLRVHHFLPSTSNAQVNMIQPWCDKIAKE
SNQRLVCQIYPAMQLGGTPAQLFDQAKDGVADIVWTLPTYAAGRFTKSAVYELPWLVPNA
ESGSRALWEFTQKYALDEYKGVHPIFMHTHSGTLMHFVNKQPKTLADMKGMKIRSANRVN
SQMLDTIGAVPVQMPLPAVPDSLAKGVVDGAAVPWEGVPAIKLDEISRYHLDVPQGKPRM
GNSIFLFGMNQARYDSLPADLKKVIDDNSGADVSAWAGRTVFDEREAEFMKTSKENGSTF
HYMDDAEYQNWIKATQGVRDLWIQAVDKKGGKGADLYAAARNMVKQYATRQ