Protein Info for ABCV34_RS02535 in Castellaniella sp019104865 MT123

Annotation: ribosome silencing factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 131 TIGR00090: ribosome silencing factor" amino acids 8 to 104 (97 residues), 116.5 bits, see alignment E=2.5e-38 PF02410: RsfS" amino acids 9 to 104 (96 residues), 107.1 bits, see alignment E=2.3e-35

Best Hits

Swiss-Prot: 51% identical to IOJAP_CHRVO: Ribosomal silencing factor RsfS (rsfS) from Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)

KEGG orthology group: K09710, ribosome-associated protein (inferred from 71% identity to put:PT7_1559)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (131 amino acids)

>ABCV34_RS02535 ribosome silencing factor (Castellaniella sp019104865 MT123)
MNLQKQQRLIIDALEDIKAQDIKVFNTTGLTSLFDRIIIASGTSNRQTRAIASHVADQAK
QHGLEIIAFEGEDTGEWVLVDLGDIVVHCMQPSVRSYYNLEDIWGAKPVHVKLSPTGPAQ
PFEPDPGFDDA