Protein Info for ABCV34_RS02370 in Castellaniella sp019104865 MT123

Annotation: ABC transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 transmembrane" amino acids 15 to 39 (25 residues), see Phobius details amino acids 82 to 106 (25 residues), see Phobius details amino acids 118 to 139 (22 residues), see Phobius details amino acids 169 to 191 (23 residues), see Phobius details amino acids 212 to 235 (24 residues), see Phobius details amino acids 268 to 291 (24 residues), see Phobius details PF00528: BPD_transp_1" amino acids 99 to 286 (188 residues), 66.9 bits, see alignment E=9.8e-23

Best Hits

Swiss-Prot: 53% identical to POTH_ECOLI: Putrescine transport system permease protein PotH (potH) from Escherichia coli (strain K12)

KEGG orthology group: K11075, putrescine transport system permease protein (inferred from 83% identity to bpe:BP2346)

MetaCyc: 53% identical to putrescine ABC transporter membrane subunit PotH (Escherichia coli K-12 substr. MG1655)
ABC-25-RXN [EC: 7.6.2.11, 7.6.2.16]

Predicted SEED Role

"Putrescine transport system permease protein PotH (TC 3.A.1.11.2)" in subsystem Polyamine Metabolism (TC 3.A.1.11.2)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.6.2.11 or 7.6.2.16

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (302 amino acids)

>ABCV34_RS02370 ABC transporter permease subunit (Castellaniella sp019104865 MT123)
MNLNFPGRRPSARQWAIAVPFAWLALFLLLPFLLVLKISFSDLQFGIPPYLPIATLQDHT
VSLALHLRGYVLLFTDNLYAAVYLNSVKMALVTTICCILIGYPMAYHIARSRPEIRNLLL
LGVILPFWTSLLLRVYAWVGILRNDGLLNHLLMGLGLVDAPLEIYRTDLAVYIGLVYAYL
PFFILPLYANLVKLDERLLEAAYDLGARPWRAFFQITLPLSMPGVIAGAMLVFIPSVGEY
VIPEMLGGANTLMMGRVMWNEFFNNADWPMAAAVTCVMVLLLLVPLSIFQYNQARQLADR
RA