Protein Info for ABCV34_RS02055 in Castellaniella sp019104865 MT123

Annotation: DEAD/DEAH box helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1773 PF04851: ResIII" amino acids 90 to 270 (181 residues), 25.6 bits, see alignment E=2.7e-09 PF00270: DEAD" amino acids 94 to 272 (179 residues), 93.4 bits, see alignment E=3.4e-30 PF00271: Helicase_C" amino acids 958 to 1045 (88 residues), 34.3 bits, see alignment 6.1e-12 PF09369: MZB" amino acids 1510 to 1612 (103 residues), 35.4 bits, see alignment 3.5e-12

Best Hits

KEGG orthology group: None (inferred from 79% identity to rpf:Rpic12D_2672)

Predicted SEED Role

"Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1773 amino acids)

>ABCV34_RS02055 DEAD/DEAH box helicase (Castellaniella sp019104865 MT123)
MDVFEFRTKLVSDYAAFTRSFTRIHAPDIRRYVDAAYESGHYWPAPLVQVNPNFQTGNTI
EDLVAQGVLHTECAQIFRAGKTATNPGVSLKLFKHQQEAITFAQNGQSYVLTTGTGSGKS
LAYFIPLVDAILKAKMADPEKRTRAIVIYPMNALANSQLEELGKFLSDYGDHPPVTYGRY
TGQESEEERLYLAKNPPDILLTNFMMLELLMTRQDDKDKAVIRHAKGLRFLVLDELHTYR
GRQGADVALLVRRVREALADELQCIGTSATMATEGSEKEKNTKVAEVAGRLFGQALSAAN
VITETLQRVTPEDLLIEHIRPELTQAVQKELPRSATFAELARHPLAIWVELTLGLTRNEG
KWHRAQPMTLEAAARQLAHDGQTDEELARRTLADFLLLAYHTTDKPVEEGGRSLFAFKLH
QFISGGSKVYGTLEPEGKRYLTLEGAQFVPGDRSRRLYTLHFCRECGQEYAPVWDENGST
GRTFSPRGIDERNHDDEDTRSGYFMPDTTGIWEDTLDLYPETWVEPRANGDLKLKSNYKK
RQPRHIRINTEGRLAADGTPGWFVPGNFGFCLRCGVTHSTAGKESLRLMGLSGEGRSSAT
TMLTLSALRYLYEDDTQLKAEAKKVLGFTDNRQDAALQVGHFNDFLQVVLLRAALFSAVD
QAGGSLSEAQVSDAIFKALGFDRDDHGVRAEYMQDPDIKGNARRQVQDIMRTILGYRAYF
DLRHGWRFNNPNLEQLGLLRIAYQDLDDLATDAESWPADIPAVLQSASPDVRKRLLIALF
DAMRQGLCLATRYLDRTELDRLKTSSYANLREPWGFTEDETPAPSNWFITSARPRDEDRR
NVDYLVSGSPRSNLGKAIKRASTWREADGSDNPHAGKIKDEQCEAIIRALLNAAKTYGLV
VSEETEFGVTGYQLNGTSLLWTLGDGQSSRGAHDNSFFRSLYRNIAGLLSNPVHRLFDFE
AREHTAQVEQDDRLEREARFRFTEKDRADWLVATGRPLDWLPVLFCSPTMELGVDIASLN
TVYMRNVPPTPANYAQRSGRAGRAGQPALVITYCAAQSPHDQYFFRDPVRMVHGQVNPPT
LDLANRELIQSHLHAVWLAETGKKLDNSVRGLLDMSDPEAALTEDYRQQMDADAPQKRAH
GRGLRILTMLEGELTPQKAPWYSERFAEQVFSQAFASFDNALDRWRDLFSATKRQMEINQ
KVMNNPAASERERRDAKQRHDEAFRQQSLLLQESGSANSDFYTYRYLASQGFLPGYNFPR
LPLMAYIPARRGKIGRENFLSRPRFLALSEFGPYSLIYHEGSQYRVTRAMLSIGANDQVS
VGAKLTTDVARICPACGYGHFRNQRDADRCVSCNAPLTEAVAVQNLYRIENVSTKRAERI
SANEEERVRQGYEMQTTIQFGEQEGKLHVMRALLMDADTPVLELQYGQSATVWRMNLGWR
RRKEKSLLGFKINPVTGHWMGGANEEDEPDTDTPPDKTPPQRIVPYVEDRRNVLIVRPLE
ALDIKTMATLQYALKRGMEAVYQLEESELMAEPLPKADLRRSILFYESAEGGAGVLTRIA
TEPEALALVATEALSIMHYQSPKDGRWDAAHLTEDREADGQPLCEAGCYRCLLSYYNQPD
HLHIDRRDADNDGKALDILCQLTRSHSSVGTFGRSPSEQQAELERVAGSSLEQAWLEYVQ
QHGYRQPDEGQHTIDRCKTSADFFYADWKAAVFIDGPHHDAAAQSAKDQAITNCLEAAGY
YVVRFPKDSARWADIFKTHADLFGPGRVAGTHA