Protein Info for ABCV34_RS01975 in Castellaniella sp019104865 MT123

Annotation: DEAD/DEAH box helicase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 902 PF04851: ResIII" amino acids 8 to 249 (242 residues), 46.2 bits, see alignment E=4.8e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (902 amino acids)

>ABCV34_RS01975 DEAD/DEAH box helicase family protein (Castellaniella sp019104865 MT123)
MNAYTPKIYQQQVLDSVQVYFEACQEQGSASIAYMTTTEALWGRASAYQSLPGFEPDMPY
FCLRVPTGGGKTWLAAKSVALVNTHLLRSEHSTVLWLVPSKPIREQTLKALRSPEHPYHA
ALREAGPVAVIDLDEAKGITRATLDTTTVVIVATRQAFQVEDEECRKVYQSNGALMHHFE
HLSAEQRAELLTEGEGVDRTTPCSLANVLRLRRPFVVVDEAHNNRTELAFEMLARLRPAG
ILELTATPDTERTPSNVLHSVSAAELKAEEMIKLPVLLETQPDWQQCLADAIARRDALQA
LVTTEYRAGGPYLRPVVLIQSQPRSATHETLDYDRVRQELTTNHGIPAEEIVVATGDERG
LEGVDADYAQGISDPRCPVKFIITQKALAEGWDCPFAYILVSLASLSSSTAVEQLLGRVL
RQPNARHLSAPELNRSYAFVASRDFAETANALRDRLVAGAGFERREVAEFIAAAHPEQQR
LDLEGRPGRIVMHPITVTLSEKPDLKAAPKAVRDKVRWDGKLNTLTLHAPLTETETQSLA
ATVSAPASAQAITQAAAQSRTSALEFFQTPAELAVRFRVPQLALRVQGELQLFDDPEVLE
YPWDLSRYEAGPQGNDWAALRAAWTVSDSGEIDIEAGTGKVISRFLPELQRDLGLAYQPE
HWDDVRLAAWLCQNVFEPSLTHESKRAFVASWVGHLLAREDFTLARVNQQKFEIRKLIEA
RIRALRKEAISRAYQRTLFADDAASHVAVSDDFSFTFNPQAYAPSRDYDGRFGVFDFRKH
YYGRIGDFDSKEEFECACHLDMLAQKGRILFWVRNLVRREGSSFFLQKATDRFYPDFLCQ
LPGDGAMPGPILAVEYKGKDRWESAKDDRLIGGLWERLSAGSRCRFVMVTDKSWKMIEER
LG