Protein Info for ABCV34_RS01760 in Castellaniella sp019104865 MT123

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 363 PF00005: ABC_tran" amino acids 28 to 169 (142 residues), 132.1 bits, see alignment E=2.2e-42 TIGR01187: polyamine ABC transporter, ATP-binding protein" amino acids 42 to 359 (318 residues), 369.2 bits, see alignment E=8.5e-115 PF08402: TOBE_2" amino acids 286 to 361 (76 residues), 48 bits, see alignment E=1.1e-16

Best Hits

Swiss-Prot: 48% identical to POTA_ROSDO: Spermidine/putrescine import ATP-binding protein PotA (potA) from Roseobacter denitrificans (strain ATCC 33942 / OCh 114)

KEGG orthology group: K02052, putative spermidine/putrescine transport system ATP-binding protein (inferred from 62% identity to bmj:BMULJ_06069)

Predicted SEED Role

"Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1)" in subsystem Polyamine Metabolism (TC 3.A.1.11.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (363 amino acids)

>ABCV34_RS01760 ABC transporter ATP-binding protein (Castellaniella sp019104865 MT123)
MSAVPTPEPLVRFQGVQKSYDGSQLVVRDLNLDIYPGEFLSLLGPSGSGKTTCLMMLAGF
ESPTRGDIFLEGRRLNDVPPHHRNLGMVFQNYALFPHMTVERNLDYPLKLRKVPAGERAD
RIHEALSMVRMQDFAKRYPAQLSGGQQQRIALARALVFKPKIVLMDEPLGALDKQLREHM
QLELKALHRQLGVTFVYVTHDQSEALTMSNRIAVFNQGIIQQVCSADTLYETPCNRFVAG
FVGDSNQFPGTVRGIDGDWCQVEIAGGMQLRGRNIQNLTAGSPCIVAMRPERILPANGDD
TNHFQASAVDEVYFGDHIRLRCRLDDSDTFFVKMPLTSDAREHAPGTRIPLRIDPGHVRI
FLP