Protein Info for ABCV34_RS01610 in Castellaniella sp019104865 MT123

Annotation: DUF423 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 126 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 44 to 62 (19 residues), see Phobius details amino acids 69 to 91 (23 residues), see Phobius details amino acids 97 to 121 (25 residues), see Phobius details PF04241: DUF423" amino acids 20 to 106 (87 residues), 99 bits, see alignment E=7.1e-33

Best Hits

Swiss-Prot: 44% identical to YWDK_BACSU: UPF0382 membrane protein YwdK (ywdK) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 54% identity to put:PT7_0394)

Predicted SEED Role

"COG2363"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (126 amino acids)

>ABCV34_RS01610 DUF423 domain-containing protein (Castellaniella sp019104865 MT123)
MTPRFLILCGAVILALGVAAGAFGAHGLRRLVTPELLDTWRTAAHYQMIHGLGLLALAAL
WARLAPTPAVWAGGLMLAGLLLFCGSLYALVLTSIRILGAITPVGGLLLILSWLALALAA
WRGPNA