Protein Info for ABCV34_RS01245 in Castellaniella sp019104865 MT123

Annotation: NAD(P)H-quinone oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 326 TIGR02824: putative NAD(P)H quinone oxidoreductase, PIG3 family" amino acids 1 to 324 (324 residues), 481.9 bits, see alignment E=4.1e-149 PF08240: ADH_N" amino acids 28 to 99 (72 residues), 33.3 bits, see alignment E=5.7e-12 PF00107: ADH_zinc_N" amino acids 151 to 266 (116 residues), 92.7 bits, see alignment E=2.7e-30 PF13602: ADH_zinc_N_2" amino acids 183 to 323 (141 residues), 86 bits, see alignment E=7e-28

Best Hits

Swiss-Prot: 34% identical to QOR_MOUSE: Quinone oxidoreductase (Cryz) from Mus musculus

KEGG orthology group: None (inferred from 73% identity to bav:BAV2660)

Predicted SEED Role

"Quinone oxidoreductase (EC 1.6.5.5)" in subsystem ZZ gjo need homes (EC 1.6.5.5)

Isozymes

Compare fitness of predicted isozymes for: 1.6.5.5

Use Curated BLAST to search for 1.6.5.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (326 amino acids)

>ABCV34_RS01245 NAD(P)H-quinone oxidoreductase (Castellaniella sp019104865 MT123)
MKAIEITKPGGPDVLRLVDRPTPVPGTGEVLIEVEAAGVNRPDVFQRQGSYPPPDGASDL
PGLEVAGRIVSGDPESAGLKIGDDVCALIAGGGYAQYCVAPAGQCLPVPSGLSMTEAAAL
PETYFTVWSNVFDRAALASGETLLVHGGASGIGTTAITLARAFGHAVYATAGSDERVQAI
EALGCTHGINYRTQDFVEEIRTLTDGRGVDVILDMVAGDYLPRNIETLADDGRLVIIAQL
GGRRGTLDCREVMRRRLTVTGSTLRARPVAVKASIARALRERVWPLLEAGVIRPRIHATF
PLADAALAHSMMDAGEQIGKIVLLTR