Protein Info for ABCV34_RS00315 in Castellaniella sp019104865 MT123

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 525 transmembrane" amino acids 15 to 38 (24 residues), see Phobius details amino acids 52 to 73 (22 residues), see Phobius details amino acids 81 to 102 (22 residues), see Phobius details amino acids 108 to 131 (24 residues), see Phobius details amino acids 143 to 168 (26 residues), see Phobius details amino acids 171 to 171 (1 residues), see Phobius details amino acids 173 to 192 (20 residues), see Phobius details amino acids 229 to 248 (20 residues), see Phobius details amino acids 259 to 280 (22 residues), see Phobius details amino acids 292 to 310 (19 residues), see Phobius details amino acids 316 to 338 (23 residues), see Phobius details amino acids 350 to 369 (20 residues), see Phobius details amino acids 375 to 396 (22 residues), see Phobius details PF05977: MFS_3" amino acids 5 to 520 (516 residues), 547.3 bits, see alignment E=3.4e-168 PF07690: MFS_1" amino acids 19 to 365 (347 residues), 105.2 bits, see alignment E=3.7e-34

Best Hits

KEGG orthology group: None (inferred from 58% identity to bja:bll4251)

Predicted SEED Role

"MFS permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (525 amino acids)

>ABCV34_RS00315 MFS transporter (Castellaniella sp019104865 MT123)
MAAGTSPLSPFRHRAFAVIWTATLVSNIGVWMQSAAGGWLMTALAPEPRMVALVQVASAL
PMFLLGLPAGALADLFDRRRLLLAMEIVGTALTAGFAILVAQGLVTPAVLLAFVFLTSAA
AAAIAPAWQAIVPQLVEKREDLAPAVALDSVSVNISRAIGPALAGVLIGSWGMAVPFAAY
VVLNLACILALYRWHPAGRPVGDLPPEQFGNAILVGLRHARYNRPLRATLVRACGFFLFA
SAYWALLPLVASRQLAAGPAIYGLLLGAIGIGAIAGTVALPRLKAWLGVDRIVAVGTAGT
AVAMVLFALARQAPLALIAGALAGASWIAVLATLNVSAQMSLPGWVRGRGLATYATVMFG
AMTVGSLAWGEFASLYGLPAAHFGAAAGVLLTVPLLRRYRLQAGVGADLTPSMYWPQQVV
ARDIDGDQGPVLVTVEYRISVDDRSGFIAAIQRQGVARRRNGAYRWGIFEDAAVSGRWME
TFVVDSWLEYLRQLKRVSHADRVLNEAVLQYQQGDPPVVTYFIAP