Protein Info for DvMF_3201 in Desulfovibrio vulgaris Miyazaki F

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 247 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family" amino acids 1 to 236 (236 residues), 328 bits, see alignment E=2e-102 PF20772: TACO1_YebC_N" amino acids 5 to 75 (71 residues), 109.2 bits, see alignment E=1.2e-35 PF01709: Transcrip_reg" amino acids 83 to 236 (154 residues), 219.8 bits, see alignment E=1.7e-69

Best Hits

Swiss-Prot: 100% identical to Y3201_DESVM: Probable transcriptional regulatory protein DvMF_3201 (DvMF_3201) from Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637)

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_3201)

Predicted SEED Role

"FIG000859: hypothetical protein YebC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DNJ5 at UniProt or InterPro

Protein Sequence (247 amino acids)

>DvMF_3201 hypothetical protein (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MAGHSKWANIQHRKGRQDAKRGKLFTKAAKEIIIAAKGGGDPASNARLRAAIAAAKAVNL
PKDKIDNAIKKGTGELAGGDILEISYEGYGPGGVALIVEAATDNRNRTVAEVRHILSKHG
GSMGEAGCVGWMFERKGVITLDGGKYTEDQVMEAALEAGADDVRDEGGTWEIHTAVSDFA
AVRDALEAAGMEMDSAELSMIPQNTVEVDAETGRKLMRLVDALEDNDDVQNVHANFDLPD
EVLAELE