Protein Info for DvMF_3142 in Desulfovibrio vulgaris Miyazaki F

Annotation: glycosyl transferase family 2 (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 430 PF13641: Glyco_tranf_2_3" amino acids 8 to 232 (225 residues), 75.3 bits, see alignment E=1.7e-24 PF00535: Glycos_transf_2" amino acids 9 to 182 (174 residues), 84.8 bits, see alignment E=1.8e-27 PF10111: Glyco_tranf_2_2" amino acids 37 to 217 (181 residues), 31.4 bits, see alignment E=3.6e-11 PF13506: Glyco_transf_21" amino acids 150 to 218 (69 residues), 27.4 bits, see alignment E=5.6e-10 PF02709: Glyco_transf_7C" amino acids 159 to 225 (67 residues), 24.2 bits, see alignment E=5.5e-09

Best Hits

KEGG orthology group: K07011, (no description) (inferred from 100% identity to dvm:DvMF_3142)

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DND6 at UniProt or InterPro

Protein Sequence (430 amino acids)

>DvMF_3142 glycosyl transferase family 2 (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MTAKAPLVSVIIPAWNLWDLTRGCLESLHEHTPGGVLEVIVVDNGSTDATASDLEPLGRS
LLGDLFRAVRLPENKGFAVASNLGAAQARADRLLFLNNDTLATPCWLPPLLRALDDDARL
GAVGPLLLYPDTDRVQHCGIAFTPSLSTEHLYANFPATHPAVAARRPLQAITGAAMLMKR
TVFTDCGGFHEGYLNGSEDLELCWRIRERGLKVACVAESRVYHLESRTPGRRDHDAANAA
RLNRRCSGCFGPDLHKLARRDGFELALTPWLETYLTLPPTREAELLATHADFEPGRCWQA
LQADPLWQSGYELLAGFLERHDRYLEASGVRLLHCYFFPSLPGYRRLALVAAQAGNPDLA
GQAARKIEHVTGLLEDPEPLVRKARGLARWARRAGEREVGALYEGWLTDLGLPLEGDEPD
APNGPDGMDE