Protein Info for DvMF_3023 in Desulfovibrio vulgaris Miyazaki F

Annotation: ammonium transporter (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 525 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 81 to 103 (23 residues), see Phobius details amino acids 123 to 146 (24 residues), see Phobius details amino acids 176 to 198 (23 residues), see Phobius details amino acids 218 to 239 (22 residues), see Phobius details amino acids 259 to 280 (22 residues), see Phobius details amino acids 301 to 318 (18 residues), see Phobius details amino acids 331 to 354 (24 residues), see Phobius details amino acids 362 to 381 (20 residues), see Phobius details amino acids 387 to 406 (20 residues), see Phobius details amino acids 418 to 437 (20 residues), see Phobius details amino acids 463 to 485 (23 residues), see Phobius details TIGR00836: ammonium transporter" amino acids 82 to 515 (434 residues), 371.4 bits, see alignment E=2.8e-115 PF00909: Ammonium_transp" amino acids 84 to 515 (432 residues), 354.3 bits, see alignment E=4e-110

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_3023)

Predicted SEED Role

"Ammonium transporter" in subsystem Ammonia assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DJ83 at UniProt or InterPro

Protein Sequence (525 amino acids)

>DvMF_3023 ammonium transporter (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MRNRKCIEIVIILLCVVFAACVSHAEDAHVSDPSGASIGTAADVIGATAGAPTKEEFDAL
SQSEPLAAKVADVVGHNRIAINMVWTLLCGFLVMFMQAGFALAETGFTRAKNAGHTMAMN
MMIYGIGMLGYWICGFALQMGGVGGVLSLGGAGALANEFTVTIAGKEFGLFGTTGFFLSG
DAYDAVIFSVFLFQMVFMDTTATIPTGSMAERWTFKSFVVYGFFISMFVYPLFANWVWGG
GWLSALGRNFGLGHGMADFAGSAVVHMTGGVAAAAGAIVLGPRLGKFKPDGTPVAMPGHH
IPMAIAGCFILAFGWFGFNAGSTLAGGDLRIGVIATNTMLASASGAFFSMMYMWMRYGKP
DVSMAANGLLAGLVAITSPCAFVNSVAAVGIGAVAGILLCVSVLFVEQTLKIDDPVGAIS
VHGVNGAWGVLSLGLFADGTYGEGLNGVEGAVKGLFYGDVSQFMAQLAGVITNIVFVFVV
MYVFFKLLDKVVPLRVDPELELEGLDQAEVAVSAYPDFNLKKAMK