Protein Info for DvMF_2971 in Desulfovibrio vulgaris Miyazaki F

Annotation: binding-protein-dependent transport systems inner membrane component (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 286 transmembrane" amino acids 15 to 38 (24 residues), see Phobius details amino acids 80 to 101 (22 residues), see Phobius details amino acids 113 to 136 (24 residues), see Phobius details amino acids 156 to 178 (23 residues), see Phobius details amino acids 204 to 226 (23 residues), see Phobius details amino acids 257 to 279 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 94 to 276 (183 residues), 37.6 bits, see alignment E=9.6e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_2971)

Predicted SEED Role

"Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1)" in subsystem Polyamine Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DSF3 at UniProt or InterPro

Protein Sequence (286 amino acids)

>DvMF_2971 binding-protein-dependent transport systems inner membrane component (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MIRSLPRSRGYTMGYGLYVTLYFVFLFAPLAVTCVLAFNDSQFPSLPWKGFTLDWFLADL
PARTGIFHDRGNLSSIFTSAQTAILVSALATLVGTCAAFLFEQEEFPLKGALYFLMLAPL
VVPGVILGISILIAATTAGTFMEDVLGIDVGILRPGFWLVVLGQFSFITTFVTLVVSARL
KKFDRTLEEAALNLGATRLEVIRYITLPFLRTAIIGAGAVAFLMSFENFNTTLFLVGSEP
TLPINLYLQVRDGSTPVINAISFLLIVGTSLVACVNLYAGRKPEAS