Protein Info for DvMF_2912 in Desulfovibrio vulgaris Miyazaki F

Annotation: flagellar hook-associated 2 domain protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 577 PF02465: FliD_N" amino acids 17 to 111 (95 residues), 76.4 bits, see alignment E=2.2e-25 PF07195: FliD_C" amino acids 220 to 557 (338 residues), 117.3 bits, see alignment E=7.5e-38

Best Hits

KEGG orthology group: K02407, flagellar hook-associated protein 2 (inferred from 100% identity to dvm:DvMF_2912)

Predicted SEED Role

"Flagellar hook-associated protein FliD" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DS94 at UniProt or InterPro

Protein Sequence (577 amino acids)

>DvMF_2912 flagellar hook-associated 2 domain protein (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MVDLASGGVYFSGLGNGTDFSKVIDQLKSIEQIPQKRLTLWKADWQRRQDAFGELRTEIA
SLKDIVDSMSTMNKFLVKTGSSSAETVASATTDSSVLEGNYKIEVGQLASSSIWTYNTAF
ADKKTKVNDSGSDQQFVYTYMGKTRSITVPSGTTIDALKNMINNDPQNPGVKAMLVQNGT
GYTFQFRGMDLGANATLSVDSGTTVTGLPGTAATWTVQASQNAKYRVNGWPAATWLESAS
NTLTGAVEGMTLTLKDVGTTQISVATDTEKIKENVKSFVDAMNAVRSKIKELTAVNSSKD
VDNPDDASSLYSMQKGSILTGNYGVQLLSTQLKMATADRAAGFEYQYKDGNLLRGDEFSS
LAHIGILTNAETNSLNAGLLELDEAKLDEVLKNNPTAVAELFAADGLPESDSSDFSYYSH
VKGVTKAGIYDVTYDVDASGNIVNAFIGGKRANIDNANKQITAMEGDARGLALQIDNLSQ
GSYASRMRIKEGKLSGLSEQLSDMLGSDGALKILEDNYQDIMDDIQKKIDKEVDRVTQWE
RRERLRYSRLEATLARYDALGKSVESQIKSLSSSTSS