Protein Info for DvMF_2796 in Desulfovibrio vulgaris Miyazaki F

Annotation: Tetratricopeptide TPR_2 repeat protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 580 signal peptide" amino acids 1 to 47 (47 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_2796)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DR97 at UniProt or InterPro

Protein Sequence (580 amino acids)

>DvMF_2796 Tetratricopeptide TPR_2 repeat protein (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MRHSGRAAPGLATGPVPPPSARLRTGLAPLLCGIAILLATAATAHAASTITVPFGGGLRK
ESAIVIARSAARLAALREGVPALLEGSAASFAALAAHDPQRRLAVASAVLTTRVTAVTVE
GYPPEVRVAVTVQADPPAYAEPAANPPRPEAAAGNDTPDTAASAPLPATADAVRAVLRND
PLLELHEEVLRREAALTEEALDAAQATARHVARHGGDDESPFAQRLGALARSLEALGLYR
ACLSGIPADADGTGGQANGRAAASGKPVARTTDLTGGQTDGQTDGQTDGLTHGQAANGQP
SPAVSTMGASAGGWGLAPEAMLRHMRRAVSLDTRNPLLWNALGEALLLLDRPQDAMEAQD
RALKLSPGFARALHARAVCHLRLQMPALAVADASAAIRLRPDVAANWRVRGAAWQVRGEP
GPMCDDFYRACALGDCEGLSLARGRGQCRPTPGGTIAPRVNDDASGNDGHTGQDRQNGGT
GPAGTSSAAAPATASGIAPDTTPNGAPGATLNVPQDAALFNEHVSPDFPSAMTPPPATNG
TAGTGETSETGETGGTGRDAGRADSLYELPDDSPAPRTLP