Protein Info for DvMF_2774 in Desulfovibrio vulgaris Miyazaki F

Annotation: AMMECR1 domain protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 233 PF01871: AMMECR1" amino acids 81 to 230 (150 residues), 174.1 bits, see alignment E=8.6e-56 TIGR00296: uncharacterized protein, PH0010 family" amino acids 83 to 231 (149 residues), 130.1 bits, see alignment E=8.8e-42 TIGR04335: AmmeMemoRadiSam system protein A" amino acids 84 to 230 (147 residues), 160 bits, see alignment E=3.6e-51

Best Hits

KEGG orthology group: K09141, hypothetical protein (inferred from 100% identity to dvm:DvMF_2774)

Predicted SEED Role

"COG2078: Uncharacterized ACR"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DJ51 at UniProt or InterPro

Protein Sequence (233 amino acids)

>DvMF_2774 AMMECR1 domain protein (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MSAPHDPTDAPHVTDTAGTAGTAGTADADPGAFRLELSADERAWLLDLARWAVLHRLAEA
GTMPGGDEEATGPDVSGVPAPPPGVLHRSLGAFVTFKKDGHLRGCIGSMVGDGPLYLTVA
RMARAAAFEDPRFPPVTVAEASALELDISVLGPLTRCPDPSLVRVGRHGLLVRQGYRSGV
LLPQVPVEWGWDRETFLAQTCRKAGLPPDTWRDAWQDGRTELYWFEAEVFGDL