Protein Info for DvMF_2727 in Desulfovibrio vulgaris Miyazaki F

Annotation: Recombinase (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 590 PF00239: Resolvase" amino acids 14 to 171 (158 residues), 60 bits, see alignment E=4.3e-20 PF07508: Recombinase" amino acids 202 to 300 (99 residues), 59.6 bits, see alignment E=4.6e-20 PF13408: Zn_ribbon_recom" amino acids 316 to 372 (57 residues), 43 bits, see alignment 7.6e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_2727)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DJ05 at UniProt or InterPro

Protein Sequence (590 amino acids)

>DvMF_2727 Recombinase (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MSTQPAPPIPKPKAYSYIRFSSPEQMKGDSYRRQYEASQNYALEQGLDLDEEFTFKDEGV
SAFKGKHTREGALGKFIEAVDQGAIRPGSYLIIENLDRLSREDPHTAYRLLSGILSRGIT
VVALQDHQIYTPESYANDFTQLLVSLLTMHRAHQESVVKSNRLSKAWAHKREDARTQGKA
MTSTCPQWLKLDKTTGRYTVLEDRAEVVRRIFKETLDGKGATMLASQFNVEGIPTFGRAK
GWWNSYIKKILTNEAVFGRLQPHTLKQVEGKRVPVGEPVDGYYPAIVDRETFYLAQAMRL
GRRIPGGRIVARFSNLFTGLVKCGVCGATMAFDNKGTGRKGGTYLVCSEAKRKVGACQRH
AWRYPQTQAHILLNLHRLDYRNLLPDIARQALDDANQLEQQLEALLAEHADTTTKVDNAT
DLLITNPNNLGLLRAQTRLETKQRELETRIAAAKNQLETARRRSQEAELVAGESDDAFKA
FIKAEHEGEPEKVYEMRRKMHQLLLRQLERITFHPASKPDSPFHGIIDITFKGTARLQRI
KVEKGQRASTGYRVNEDGTEVLSVMEPDAVWPPEGRLLAGQDLGYLLGIG