Protein Info for DvMF_2628 in Desulfovibrio vulgaris Miyazaki F
Annotation: hypothetical protein (RefSeq)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_2628)Predicted SEED Role
"Aspartate ammonia-lyase (EC 4.3.1.1)" in subsystem Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis (EC 4.3.1.1)
MetaCyc Pathways
- L-glutamate degradation II (2/2 steps found)
- L-aspartate degradation II (aerobic) (2/3 steps found)
- L-aspartate degradation III (anaerobic) (2/3 steps found)
- superpathway of L-aspartate and L-asparagine biosynthesis (2/4 steps found)
- L-canavanine degradation II (1/6 steps found)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 4.3.1.1
Use Curated BLAST to search for 4.3.1.1
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See B8DIQ6 at UniProt or InterPro
Protein Sequence (591 amino acids)
>DvMF_2628 hypothetical protein (RefSeq) (Desulfovibrio vulgaris Miyazaki F) MMHPDDAPRRSARCSAFRHHMPPCPLALPRETCYRAGMRIFTIRGALRRPTVPFLSFPAC GIASVTLAAALLLAPFAVQAAPQTQNAPAVPAQSAQSAGIADPLPAAPASVVLYPRSARV TVEDRVSVEAAPGGGQAFRLALPAGADPATLSVTIPGNGVASISIREADATESPRLARLR AELAGLRREAASVAGSIAATEARMALWSKPPVTNAPTADLERLDAQMARRLAELNATLPD LRDKQAALAARIDRLEQELNDAGGATRTAPTATVLLASPARGPLAVSYAYTLRDAGWRPA YRLEAFPDKGSVGFTFEAEIRQGGSVDWNGARLSVATVEPGTALQPPPLRDWQLRPILGV TPMPMAMKAAPMAAEAVALRADAAPAAPAVDEKATYEVWDLGPRTLPAGGSARVALRGET WPAAFRHTVRPAADPRAFLTASVTLPEPRHYPTGEALYVADGASVGSAPFSLAEDKADIF FGSDPMVSATMRLDERKSGREGLVNKQQTRTWAWTIEVANRRATPVSVRVEDPQPQPRDT AISLSVESDPKPATENHHLVWTLDVAPRATATIRHTVRATAPADMRLDDGR