Protein Info for DvMF_2589 in Desulfovibrio vulgaris Miyazaki F

Annotation: Lysine exporter protein (LYSE/YGGA) (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 243 transmembrane" amino acids 6 to 30 (25 residues), see Phobius details amino acids 42 to 66 (25 residues), see Phobius details amino acids 71 to 92 (22 residues), see Phobius details amino acids 140 to 163 (24 residues), see Phobius details amino acids 178 to 200 (23 residues), see Phobius details amino acids 221 to 239 (19 residues), see Phobius details PF01810: LysE" amino acids 17 to 239 (223 residues), 98.7 bits, see alignment E=1.5e-32

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_2589)

Predicted SEED Role

"Lysine exporter protein (LYSE/YGGA)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DR50 at UniProt or InterPro

Protein Sequence (243 amino acids)

>DvMF_2589 Lysine exporter protein (LYSE/YGGA) (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MHGVHDIWLFVVSGLLLNITPGPDMLYIIARSTPCGTSGTRGLRAGVAAALGIGAGCSVH
IAAAAFGLSAVLATSATAFTVVKLLGAAYLLYMGCTMLLSRKGTLPSAAPATRDGAMPYG
CGRNEASTGRTSWASLRGVFAQGFLTNALNPKVALFFLAFLPQFVEGGGNAGTPPSPVAF
LVLGCIFTVNGTLVNLLVAWGAARLGSIFRAGSLAGRFARWGDRCLGALFLFLGIRLALA
EQG