Protein Info for DvMF_2556 in Desulfovibrio vulgaris Miyazaki F

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 219 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 72 to 95 (24 residues), see Phobius details amino acids 113 to 133 (21 residues), see Phobius details amino acids 145 to 163 (19 residues), see Phobius details amino acids 175 to 193 (19 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_2556)

MetaCyc: 68% identical to Tmc electron transfer complex C subunit (Desulfovibrio vulgaris)

Predicted SEED Role

"FIG00603613: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DR17 at UniProt or InterPro

Protein Sequence (219 amino acids)

>DvMF_2556 hypothetical protein (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MQQLYNFAVGPLAWVAWAVFLGGSAWRLASMWALARKKDMNAVAYMDVRHAARSMAHWAT
PFATLGWRANPAVTVATFAFHTALGLLLLFAPGHAVLWDYAFGINVWSLPEGMADTLTVL
VILLCGFFAWRRLQLPVVRFVTRPMDWLVLALVAVPCVTAFMAKQQIGDNLLLSTLHVLS
GEATLMALPFTRLSHAIFSPFTRAYMGSEFGGVRHCPDW