Protein Info for DvMF_2543 in Desulfovibrio vulgaris Miyazaki F

Annotation: response regulator receiver protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 121 PF00072: Response_reg" amino acids 4 to 116 (113 residues), 102.2 bits, see alignment E=9.4e-34

Best Hits

Swiss-Prot: 39% identical to PILH_PSEAE: Protein PilH (pilH) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_2543)

Predicted SEED Role

"response regulator receiver protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DR04 at UniProt or InterPro

Protein Sequence (121 amino acids)

>DvMF_2543 response regulator receiver protein (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MKRILIAEDQYEVRELVQATLRIGNYQILQAENGMQAVEMARLHRPDLILMDVMMPGEID
GLEATRRIRSDPVTAGCRIIMLTAKGQTQDREEGLRAGADDYFPKPFSPLALIRKIEEFL
G