Protein Info for DvMF_2408 in Desulfovibrio vulgaris Miyazaki F

Annotation: major facilitator superfamily MFS_1 (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 856 transmembrane" amino acids 48 to 70 (23 residues), see Phobius details amino acids 208 to 230 (23 residues), see Phobius details amino acids 249 to 269 (21 residues), see Phobius details amino acids 402 to 421 (20 residues), see Phobius details amino acids 442 to 461 (20 residues), see Phobius details amino acids 481 to 502 (22 residues), see Phobius details amino acids 509 to 528 (20 residues), see Phobius details amino acids 534 to 556 (23 residues), see Phobius details amino acids 568 to 589 (22 residues), see Phobius details amino acids 595 to 615 (21 residues), see Phobius details amino acids 652 to 675 (24 residues), see Phobius details amino acids 688 to 706 (19 residues), see Phobius details amino acids 718 to 736 (19 residues), see Phobius details amino acids 741 to 765 (25 residues), see Phobius details amino acids 784 to 804 (21 residues), see Phobius details amino acids 810 to 828 (19 residues), see Phobius details PF07690: MFS_1" amino acids 446 to 794 (349 residues), 103.6 bits, see alignment E=5.5e-34

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_2408)

Predicted SEED Role

"FIG00603796: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DMQ9 at UniProt or InterPro

Protein Sequence (856 amino acids)

>DvMF_2408 major facilitator superfamily MFS_1 (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MTQDTTPTGPGADAASTTSFSTASGTASTKAPPESTDGAALRGLRTRLLAWGVLALLCAQ
LFYGVLVGSSLHRQYRGPMLAVQALTCDDLALRLGRMARLGKPLDRIRDLSGMLAPFRTA
SPAADLLVTDAAGTVLGSWDAARVGTSMTVPRDAAPVPGSNAFEFAAGGDTWLTRPIPGK
DGAAVGHVLLRLDAARLDADLAGAAAHLPLFGGIAAGSCLLLAVLCFVLLPGGGSTLTQA
AWRRRARMVLLLPLLAGQVCLMVVMGGPLKDIHVRQSGDIATQLAGQLGRDLSSIVAKGV
PLERLPGIETHLQSLQRGLPQVVGIGMLGADGTLLSAASAAGPLDAATWSGLGADAPQGI
SVVPGGALSGGQGDAPAAGAVRVLMSSDAIAGGLREALLDTATVSVVAMLLLVELASLLL
VQAERGVMSPRPALADMPGFMRAVIFFCMCAIDLSVSFIPLRLAELDAGLFGLPRDVVMG
LPVSFEMLMVGMAIVVGGTLAARHGWRPLLLAGVVLAAAGAAASGVAATPLGYILARGVA
GAGYGCINLAAQVHVVSHSSARNRAANLGSMFAGLFAGVVCASATGGLVADRVGYGPVFL
VSAVLLCAVLAWLLLCPSRDVPGARVTTDEPQAPTEHRGGVAAFLRDRRMAALLLCNIMP
LSFVTVCLFQFFVPVYLNADGASPADIGRVSMLFCLVVVYLGPLCGRLVDASPRKHRALT
VAGLLGAASVAALLAGSGIDVAVAAVCLLGMSNAVASSGQGTYALQLPAAAIMGRSRTMS
LYNVMERVGQVLGPVSFGVVLAMWGRDAGLVVMAAGMGAASLLFFACTAGRPDAVPGAVP
VTAMPGDASPDHAERP