Protein Info for DvMF_2407 in Desulfovibrio vulgaris Miyazaki F

Annotation: ABC-type uncharacterized transport system, periplasmic component (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 391 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details PF04392: ABC_sub_bind" amino acids 124 to 364 (241 residues), 27 bits, see alignment E=1.3e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_2407)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DIQ0 at UniProt or InterPro

Protein Sequence (391 amino acids)

>DvMF_2407 ABC-type uncharacterized transport system, periplasmic component (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MLSARMVYAHMLSARMVCILLLAACCCMAALPAQAAAPEAGARVWRVAYIEGGPYTDYQQ
ILAGTVRGLARLGLIPDGNVPVPQGTESTREMWQWLTAHANGGRIEFLADGYYTADWDPA
RRAANRAELLKRIRERGDVDMIFAYGTWAGLDMATDDHAVPTFSMSVTDAVGAGIVKSVE
DSGHDHVHAQLEPGRYERQLAVFHDVFKFKRLGVPFDDTPEGRASIAMPVIERTAAELGF
TIVPCPARFDVPDLDVAFGNLLQCVETLSRTSDAVYLTVNTGMQGKRMVELLQPVIRAGV
PTFSQSGPEETKLGVLLSLAQASFDDVGLFEAEAVQKVINGAKPREVSQVFEGPLGLAIN
LRMAMLIGWNPPFDILAAVDEIHQQIQNAEN