Protein Info for DvMF_2264 in Desulfovibrio vulgaris Miyazaki F

Annotation: DNA binding domain protein, excisionase family (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 328 PF12728: HTH_17" amino acids 4 to 53 (50 residues), 46 bits, see alignment 4.8e-16 TIGR01764: DNA binding domain, excisionase family" amino acids 4 to 51 (48 residues), 41.1 bits, see alignment 8.8e-15 PF12727: PBP_like" amino acids 89 to 298 (210 residues), 176.1 bits, see alignment E=4.6e-56

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_2264)

Predicted SEED Role

"Molybdopterin biosynthesis protein MoeA" in subsystem Molybdenum cofactor biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DQT8 at UniProt or InterPro

Protein Sequence (328 amino acids)

>DvMF_2264 DNA binding domain protein, excisionase family (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MKQLLSTREVAKVLGVNEKMVYSLITEKGLPATKVTGKWLFPAHLVEQWLENNTVNHPER
AGGTVQPGGGVLVLAGSNDLLLDKAMGLFADLNPGHIAAFANLGSLGGLRAMREGLCHMA
ASHLMEGGPGHAAEPAAPGSAPAGGGTGGKSGRDYNFGHARQELDEAPAVVNFCIREQGY
LVAPGNPNAVRDAGDIVRKGLRVVNRPLGTGTRLLFDTELSRVGADPLRIPGYGTEVRRH
LDAGIEVLAGRADAAPGIRAVAGLLGLGFVPVQRERFDLLVPRARYFDRGVQLFLGMLVD
ARFRALADGFEGYDLSRAGRVVFPGDAP