Protein Info for DvMF_2215 in Desulfovibrio vulgaris Miyazaki F

Name: fliP
Annotation: flagellar biosynthesis protein FliP (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 293 transmembrane" amino acids 39 to 63 (25 residues), see Phobius details amino acids 92 to 121 (30 residues), see Phobius details amino acids 134 to 153 (20 residues), see Phobius details amino acids 235 to 259 (25 residues), see Phobius details amino acids 271 to 291 (21 residues), see Phobius details PF00813: FliP" amino acids 95 to 287 (193 residues), 267.7 bits, see alignment E=3.3e-84 TIGR01103: flagellar biosynthetic protein FliP" amino acids 95 to 291 (197 residues), 269.2 bits, see alignment E=1.1e-84

Best Hits

KEGG orthology group: K02419, flagellar biosynthetic protein FliP (inferred from 100% identity to dvm:DvMF_2215)

Predicted SEED Role

"Flagellar biosynthesis protein FliP" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DQN9 at UniProt or InterPro

Protein Sequence (293 amino acids)

>DvMF_2215 flagellar biosynthesis protein FliP (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MAAVRPLVPASCDLPVGHAPLPGSPQLPGATRPASACRLLSLVTALLLPLSLLSLLGGGV
AHAAQDLVMPTMQLTLGAGQTEPEKVSLLLEILFMLTVLSLAPAIMLTVTSFTRIIIVFH
FIRQALGVQQLPPSQVLASLAIFMTVVIMMPVGKQINDTALQPYLEERIGFNEALDKAQV
PLRSFMFKHTREKDLSIFYAITKMEQPRTKEEVPTVMLAAAYVISELKTGFTIGFLIYIP
FLVLDMVVSSILLAMGMMMLPPMMVSMPFKLLLFVMVDGWALLVGSLVNSFAV