Protein Info for DvMF_2156 in Desulfovibrio vulgaris Miyazaki F

Annotation: ABC transporter related (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1106 transmembrane" amino acids 735 to 755 (21 residues), see Phobius details amino acids 911 to 933 (23 residues), see Phobius details amino acids 960 to 983 (24 residues), see Phobius details amino acids 990 to 1014 (25 residues), see Phobius details amino acids 1020 to 1041 (22 residues), see Phobius details amino acids 1052 to 1072 (21 residues), see Phobius details amino acids 1078 to 1098 (21 residues), see Phobius details PF00005: ABC_tran" amino acids 31 to 173 (143 residues), 100.7 bits, see alignment E=3.1e-32 amino acids 401 to 544 (144 residues), 111.7 bits, see alignment E=1.3e-35 PF12679: ABC2_membrane_2" amino acids 722 to 1040 (319 residues), 42.9 bits, see alignment E=1.1e-14 PF12698: ABC2_membrane_3" amino acids 737 to 1097 (361 residues), 139.5 bits, see alignment E=4.6e-44 PF01061: ABC2_membrane" amino acids 909 to 1069 (161 residues), 59.4 bits, see alignment E=1.1e-19

Best Hits

KEGG orthology group: K01990, ABC-2 type transport system ATP-binding protein (inferred from 97% identity to dvm:DvMF_2156)

Predicted SEED Role

"ABC transport system, permease component YbhS"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DQI0 at UniProt or InterPro

Protein Sequence (1106 amino acids)

>DvMF_2156 ABC transporter related (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MTAPSPVFAARGLCRTFPAPGAGGAVVRAVDDVTLDLAPGTINGLLGPDGAGKTTLLRLA
AGLLLPDAGSLTVLGRDTVTQAQAVQSAIGYMPQRFGLYEDLSVAENLSLYADLHGVSAA
QKAERWPALMRMTGLAPFLDRLAGRLSGGMKQKLGLACTLVRSPRLLLLDEPTVGVDPLS
RRELWNIVFSLVREHGITVLVSTAYLDEAEHCDRVAIMHHGRLVGDGAPGHFTRPLTGRT
WFVTPAMRARAAQTMLPAAPGVTDAVLHAGGVRLLTETPEAARALVACGLLTEGESAPGT
VGQLHPRAPGFEDGFLALFAALPQEAGTGDRPAPGRDSMPAAPPAPYASATDTPAPDAPD
CPSQGQPSALAPEPPNSHPDSTPVIEVRGLERRFGTFMAVKGASFDVRRGEIFGLLGPNG
AGKSTIFRMLCGLLPPTGGSLRVAGVDLRRAPAAARRRVGYVAQKFSLYGQLSVLENLRF
FASAYGLYGAARDARMAWALRDFDLADVADAQSGDLSLGYRQRLAMACALMHEPDILFLD
EATSGVDPLARREFWRRITALAESGVTVIVTTHFLDEAEYCDRMAILVGGEVLALGTPAE
IRALAPAADDATDGPREAARRDDGQRDAPGHASGQATIERAFIALAERHRAKAPGATGVT
GVTGATGMTGVAGAPGQTAPSSGPGMRPLSGTPDSAHPAPAGQAQDIRPTALRGLLLRMR
GLLRKEWLQVVRDPSAIAIALVMPVVLLFLFGYGISLDARDVPVAIVTDDLGPEAMEFAA
RLLLADTFRPRVVTDMRRAEEDLRAGRVDAIVHLQSDFARRLSDATGGATGGAAGGTARP
DGAPPAGDAGTVPVQLIVNGVDPNNARTVSGYVTSVWQSWLSGRVAAAGQVPAVRMATRM
WFNPTADSRHFLVPGLMVLIMTLTGALLTAMVMAREWERGTMEALLVTPVRMGELLTGKL
LPYFVLGMGGMVLTVIMALYLFGVPLRGSLAVLAGASSLFLTAALGMGLFISVLARNQFI
AGQAALLATFLPALFLSGFIFDLESTPGFVQAVSYVIAARYFATLLKTIFLAGEVWEVIV
PNALALAALAFFFLTVARLRCRKRLD