Protein Info for DvMF_1956 in Desulfovibrio vulgaris Miyazaki F

Annotation: Aldehyde ferredoxin oxidoreductase (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 575 PF02730: AFOR_N" amino acids 3 to 205 (203 residues), 196.3 bits, see alignment E=4.9e-62 PF01314: AFOR_C" amino acids 223 to 556 (334 residues), 248.1 bits, see alignment E=1.7e-77

Best Hits

KEGG orthology group: K03738, aldehyde:ferredoxin oxidoreductase [EC: 1.2.7.5] (inferred from 100% identity to dvm:DvMF_1956)

Predicted SEED Role

"Tungsten-containing aldehyde:ferredoxin oxidoreductase (EC 1.2.7.5)" (EC 1.2.7.5)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.2.7.5

Use Curated BLAST to search for 1.2.7.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DQ35 at UniProt or InterPro

Protein Sequence (575 amino acids)

>DvMF_1956 Aldehyde ferredoxin oxidoreductase (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MAKFIRIDMGSRTAEIGACPEKYAGLAGRGLTSMFIADEVKPTCHPLGKYNKLVFAPGFL
TGTSAVNSGRISCGAKSPLTGGIKESNSGGSFSQKMARLDIKALVFEGLPADGKYAVVKV
DKDGVTFDEAPAEIMGAGNYDAIRVLQDKYGPKVGVALIGPAGEMKLTAANISFADPEGN
IRSAGRGGLGAVMGSKGIKAVVIDDAGAPAVPIAKPEEFKSAAKRFANALTTHPVTGQGL
PKYGTNVLVNILNEAGGLPTENFRRGRNEWANNIGGETMAATIEERGGKTTHGCHAGCVI
RCSQHYVDKQGKYITSGFEYETIWALGADAAIDDLDAIAYADREFDEVGIDSIETSVAVA
VAMDAGVIPWGDGKAALDLIKQIRQGTPLGRILGSGAAAVGQMYGLTRVPVVKNQAIPAY
DPRAVKGVGLTYATTPMGADHTAGYAVATNILRVGGFVDPLGKEGQVELSRNLQIATAAV
DSTGMCLFIAFAILDIPDGFNALVDMINARYDLSLTGDDVTALGKTILKAELDFNRRAGF
TSAHDRLPEFFEEPCPPHNTVWDFTDEEIDSVLAF