Protein Info for DvMF_1897 in Desulfovibrio vulgaris Miyazaki F

Annotation: polysaccharide biosynthesis protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 511 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 50 to 69 (20 residues), see Phobius details amino acids 81 to 101 (21 residues), see Phobius details amino acids 113 to 131 (19 residues), see Phobius details amino acids 152 to 171 (20 residues), see Phobius details amino acids 178 to 198 (21 residues), see Phobius details amino acids 219 to 238 (20 residues), see Phobius details amino acids 256 to 277 (22 residues), see Phobius details amino acids 299 to 318 (20 residues), see Phobius details amino acids 324 to 324 (1 residues), see Phobius details amino acids 328 to 345 (18 residues), see Phobius details amino acids 368 to 386 (19 residues), see Phobius details amino acids 393 to 416 (24 residues), see Phobius details amino acids 435 to 457 (23 residues), see Phobius details amino acids 465 to 490 (26 residues), see Phobius details PF01943: Polysacc_synt" amino acids 14 to 272 (259 residues), 44.5 bits, see alignment E=7.2e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_1897)

Predicted SEED Role

"Membrane protein involved in the export of O-antigen, teichoic acid lipoteichoic acids"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DMJ6 at UniProt or InterPro

Protein Sequence (511 amino acids)

>DvMF_1897 polysaccharide biosynthesis protein (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MTQPTLAKRYAFKLLANVASIPVYLTMEAVLPRALGPTGYGNYSFATNMFQQFAGFLDMG
TSTCFYNALSRRQQEFGLVSFYVRVAALVLAITMLFSLSAYVPGLGQWLLPDVPAWIVPL
AALWAFLSWWGRVLRSMNDALGVTVSSEISRTVLNLASVGALLALFLLGWLNMGTLFAHQ
YVTLIALAVGYALVLRGCWPTVTFRMPKDERRAYTREFADYSTPLFVQALASTVFLVAER
WLLQTFNGSAQQGFFALSQKVGMACFLFVSAMTPLVMRELSIAWGKGDRTEMGRLMDRFA
PLLFTVAGYFSCFTAMEAPAVVRIFGGADYAAAILPVQIMALYPVHQAYGQLAGSVFYAT
GRTRTMRNMAVTEYILGFGLSWLLLAPADKFGFGLGAMGLAVKTVLVQFLSVNFMLWMSS
RIIPLNYLRNVAHQALCLAFLGGAAWACRSLTIATGLGDAQDIVRFFVSGVIYSALVGGA
VLAVPQLVGLTRQDLRGLAKRALGRFRKSGA