Protein Info for DvMF_1850 in Desulfovibrio vulgaris Miyazaki F

Annotation: Capsule polysaccharide biosynthesis protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 501 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details transmembrane" amino acids 33 to 54 (22 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_1850)

Predicted SEED Role

"FIG00606995: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DMF0 at UniProt or InterPro

Protein Sequence (501 amino acids)

>DvMF_1850 Capsule polysaccharide biosynthesis protein (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MTYGAMVQAFLAFQSRALEEGGNPVRGGSPVFVYLAPWLATLVPFYSMTVAMLLRQAGRE
VVLVWDDLPAFRVPSDEQTGIAVAIKEMVRAGFPVVRLSECTEAPHDRGDLDAARRLAAL
NALWWWKSPVPCRELARHTAEQFAAIAPSLPRILGFFRDYAPPRLVLPGGIFRHTGLLLH
AGRKAGTVVTTYDSGPGSVSTGVNSVAAHLDDVPKVLGPLLADDPHVAGLAREIGERELR
LRLEGVDKYQFQPVSAGAASPDRGAVQGDVLFPLNLENDSSALGKHRLFNDSSEWLTVTI
GHILDRTTATVLVRQHPYEARLANRNDAMLDALERQFGASGRFRLLRCDATVNTYDLIRS
CRLVLPFVTTLGLEAAILGRKVEMMAEAFYAGLSFTPLPRNREEYLRRIEDALATPDVPR
IHEGEAWLAYYLSQICGRIWTRFTPQPQDGCVWMQENLAQLADDPDVRAVLECLGDGRFI
SRVQHERLMEHGFDAVYPRRQ