Protein Info for DvMF_1568 in Desulfovibrio vulgaris Miyazaki F

Annotation: polar amino acid ABC transporter, inner membrane subunit (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 224 transmembrane" amino acids 22 to 46 (25 residues), see Phobius details amino acids 57 to 77 (21 residues), see Phobius details amino acids 84 to 103 (20 residues), see Phobius details amino acids 123 to 141 (19 residues), see Phobius details amino acids 154 to 173 (20 residues), see Phobius details amino acids 185 to 207 (23 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 12 to 109 (98 residues), 108.2 bits, see alignment E=1.2e-35 PF00528: BPD_transp_1" amino acids 33 to 214 (182 residues), 71.7 bits, see alignment E=3.3e-24

Best Hits

Swiss-Prot: 35% identical to PATM_VIBHA: Probable amino-acid ABC transporter permease protein PatM (patM) from Vibrio harveyi

KEGG orthology group: K02029, polar amino acid transport system permease protein (inferred from 100% identity to dvm:DvMF_1568)

Predicted SEED Role

"ABC-type amino acid transport system, permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DRX7 at UniProt or InterPro

Protein Sequence (224 amino acids)

>DvMF_1568 polar amino acid ABC transporter, inner membrane subunit (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MFDVDFLVDRVFPSLNAGLWMSVKLIVPSAVFGLLFGVIIGIVRVFGKPWMQRIANAYTA
LFRGVPLLVQLFILYFGLPNIGIYLEPYAASVLGFILCSAAYNSEYVRGALLSIRQGQLR
AAQALGFSTMQTLVSIVVPQAVRRALPGCGNEIVYLIKYSSLAYVITCIELTGEAKVLAS
RTFRFTEVFLVVGAYYLFLVTVASWLLHKLEERFHIPGFGRPRQ