Protein Info for DvMF_1517 in Desulfovibrio vulgaris Miyazaki F

Annotation: transcriptional regulator, TetR family (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 372 PF00440: TetR_N" amino acids 102 to 148 (47 residues), 44.9 bits, see alignment 7.8e-16 PF09209: CecR_C" amino acids 185 to 306 (122 residues), 99.5 bits, see alignment E=1.5e-32

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_1517)

Predicted SEED Role

"transcriptional regulator, TetR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DLT9 at UniProt or InterPro

Protein Sequence (372 amino acids)

>DvMF_1517 transcriptional regulator, TetR family (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MHDALPARKTPDAPAVASTASGCEPRTNARDAATRESAPQQVQPQPPLRSVSAGAKAAGA
VPAPPPAAGDRDGQTPSSQTPASQVPDSQAPDGQTPDSRVRIMAAAGETFAELGFHRASL
REICRRAGVNVALVKYHFGDKQGLYRAVLLQPFPEPPLPSPPSASGMAAPGPGDATGAAS
AAADPETRLRAFIRSQLHRTRGSRRPEWYNRLLIREMTDPTGVIGDIVGKVIGARSAYLG
ETVRELLDEPDGSRAVALCALSVVGQSLHHHFARNVIPLLYPEISYDAASLDELEEHITA
FSLAGIAALRERLRAARSAPRECPQCPATPENPASPENPGATGSPGSPGRTGSATPNTAS
IPPTPSRQRNTA