Protein Info for DvMF_1261 in Desulfovibrio vulgaris Miyazaki F

Annotation: putative phage repressor (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 236 PF07022: Phage_CI_repr" amino acids 10 to 73 (64 residues), 38.5 bits, see alignment E=1.2e-13 PF00717: Peptidase_S24" amino acids 104 to 229 (126 residues), 73.6 bits, see alignment E=1.1e-24

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_1261)

Predicted SEED Role

"transcriptional regulator, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DLE8 at UniProt or InterPro

Protein Sequence (236 amino acids)

>DvMF_1261 putative phage repressor (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MQTAKSFEAIFERLMKAAGVRNDSELARALGITPQSVNGARKRGEVPPAWVQSYAERTGT
SSDWLFFGRGPMRVEEQAQAAPAGKSAFGPETVTCADCELVMVPMVEARLSAGNGSFEVG
ADVERRYAFRTDFLLRKGSPSSMVLMRVDGDSMEPYVLNGDVVLVDQSQRDPRPGKVYAV
GVEELVYLKVVNASPGKLVLTSYNASYAPLEIDARGDLADGVRIIGRAVWVGRELG