Protein Info for DvMF_1171 in Desulfovibrio vulgaris Miyazaki F

Annotation: C_GCAxxG_C_C family protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 257 TIGR01909: C_GCAxxG_C_C family protein" amino acids 99 to 208 (110 residues), 63.2 bits, see alignment E=1.2e-21 PF09719: C_GCAxxG_C_C" amino acids 100 to 214 (115 residues), 83.1 bits, see alignment E=8.8e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_1171)

Predicted SEED Role

"C_GCAxxG_C_C family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DKG2 at UniProt or InterPro

Protein Sequence (257 amino acids)

>DvMF_1171 C_GCAxxG_C_C family protein (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MKTGIPPHADMDGASRAGCPDACDLVCGNADEGCGGGAGCGDGAVDGRAEPGDGACGAPR
PPADGRLSALAGQLDDVSDPVVEAIRCRAENLFDTRQLLCAEAVLHAVAETLGGPLSPDQ
AAALGTPFCQGMGGAGCTCGALSGAVAAVGLYRGRPERGAGGAKGRALARRMHDAFRADC
GATCCRVLIRHVRHDKTAHFAQCRALTGKGAVLAARELLAEGVRPRDGALPLPSDTGLTL
WRNRLRALLRLPFRRRG